Phylogenetic relationships of Sciurus were examined based on the mitochondrial cytochrome b gene sequences of three Old World and four New World species. The purpose was to test for monophyly in Old World Sciurus (S. anomalus, S. lis, and S. vulgaris). Phylogenetic trees well supported clustering of (1) S. anomalus, (2) S. lis and S. vulgaris, and (3) the four New World Sciurus species. Sciurus anomalus was more closely related to the clade consisting of New World Sciurus species than the one consisting of S. lis and S. vulgaris, indicating a polyphyletic relationship in Old World Sciurus. The primary divergence of Sciurus may have taken place early on the Eurasian Continent. Then, the ancestral stock of modern New World Sciurus would have migrated from the Eurasian Continent to the North American Continent.
Dolichopodidae (over 6000 described species in more than 200 genera) is one of the most speciose families of Diptera. Males of many dolichopodid species, including Dolichopus, feature conspicuous ornaments (Male Secondary Sexual Characters) that are used during courtship. Next to these MSSCs, every identification key to Dolichopus primarily uses colour characters (postocular bristles; femora) of unknown phylogenetic relevance. The phylogeny of Dolichopodidae has rarely been investigated, especially at the species level, and molecular data were hardly ever involved. We inferred phylogenetic relationships among 45 species (57 samples) of the subfamily Dolichopodinae on the basis of 32 morphological and 1415 nucleotide characters (810 for COI, 605 for Cyt-b). The monophyly of Dolichopus and Gymnopternus as well as the separate systematic position of Ethiromyia chalybea were supported in all analyses, confirming recent findings by other authors based purely on morphology. Within Dolichopus, stable species groups could be assigned to four distinct categories on the basis of their statistical support in 7 phylogenetic analyses: (i) clades significantly supported in all analyses, (ii) clades supported in trees based on DNA and combined data, but only partly in morphological trees, (iii) clades significantly supported in trees based on DNA and combined data, but not in morphological trees, and (iv) clades consistently supported only in morphological trees. The phylogeny generated here provides a better understanding of the phylogenetic relevance of some debated morphological characters used for species and species-group characterizations in the most commonly used identification keys. In this respect, postocular bristle colour proved of little phylogenetic relevance since every group with species featuring black bristles also included species with partly yellow bristles. Entirely or partly infuscated femora explained the nodes of three stable species groups and even revealed an incorrect polarity of this morphological character in three species. Four of 6 complex MSSCs and 5 of 8 more common MSSCs were found consistently in further species groups.
Phylogenetic relationships of 27 species within the genus Ochotona were reconstructed through mitochondrial cytochrome b gene. Maximum parsimony, neighbor-joining and maximum likelihood analysis strongly indicated five major species groups: the northern group, the surrounding Qinghai-Tibet Plateau group, the Qinghai-Tibet Plateau group, the Huanghe group, and the Central Asia group. The northern group is composed of O. alpina, O. hyperborea, O. pallasi, O. princeps, and . The surrounding Qinghai-Tibet Plateau group includes O. macrotis, O. roylei, O. ladacensis, O. rutila, O. erythrotis, O. gloveri, O. brookei, O. muliensis, O. iliensis, O. himalayana, O. koslowi, O. forresti, and O. rufescens. The Qinghai-Tibet Plateau group contains O. curzoniae, O. thibetana, O. cansus, O. annectens, O. nubrica, O. daurica, and O. thomasi. The Huanghe group and the Central Asia group comprise only one species, O. huangensis and O. pusilla, respectively. Our data did not support the previous subgeneric classification. The phylogenetic trees suggested that divergences of the five groups occurred in the Early Pleistocene (about 2.8 Myr ago), and that the differentiation of the surrounding Qinghai-Tibet Plateau group, the Qinghai-Tibet Plateau group, and the Huanghe group was closely related to the uplifting of the Qinghai-Tibet Plateau and the radiation prompted by environmental changes could play a major role in these groups. Due to the relatively stable environments, however, differentiations were not so strong within the northern group and the Central Asia group, which had never invaded the Qinghai-Tibet Plateau.
The genetic variation of the forest dormouse Dryomys nitedula (Pallas, 1779) from isolated populations of Russian Plain and the Caucasus was investigated using cytochrome b gene (cytb). The genetic distance calculated between these populations of forest dormouse was 9.94 %, which corresponds to the typical distance between biological species of mammals. The genetic distance of cytb between Western and Central Caucasus forest dormouse populations is also significant, 6.0 %. Probably, there was a long-term isolation of European and Caucasian areas of D. nitedula during the whole Pleistocene.
The short-finned eel Anguilla bicolor is known to be subdivided in two distinct subspecies (i.e. A. bicolor bicolor and A. bicolor pacifica), each subspecies being geographically distributed in allopatry. The present survey intends to describe genetic differentiation, population structure, molecular variance and phylogeny of both subspecies of A. bicolor in Indonesian waters. The genotypes of seven microsatellite locus and sequences of the entire cytochrome b were analyzed on 180 specimens collected in 10 representative locations, where one of the two subspecies spend their freshwater life. The results showed high heterozygosity (0.767 < He < 0.891). Significant deviation from Hardy-Weinberg equilibrium were essentially detected on AjTR04 and Aro63 loci. No diagnostic microsatellite loci was observed between the subspecies which shared most of their alleles. Genetic Reynolds distances computed for each population ranged
between 0.029 and 0.073 among A. bicolor pacifica populations, between 0.045 and 0.149 among A. bicolor bicolor populations and between 0.042 and 0.114 among populations of different subspecies. Both the mitochondrial and the microsatellite markers confirm the subdivision into two subspecies while microsatellite loci suggest a moderate differentiation between subspecies.
The genus Triaenops has been considered monospecific in its a frican and Middle Eastern range (T. persicus), while three other species have been recognised as endemic to Madagascar (T. menamena, T. furculus, and T. auritus), and another to the western Seychelles (T. pauliani). We analysed representative samples of T. persicus from East Africa and the Middle East using both morphological and molecular genetics approaches and compared them with most of the available type material of species of this genus. Morphological comparisons revealed four distinct morphotypes in the set of examined specimens; one in Africa, the others in the Middle East. The Middle Eastern morphotypes differed mainly in size, while the allopatric African form showed differences in skull shape. Two of three Arabian morphotypes occur in sympatry. Cytochrome b gene-based molecular analysis revealed significant divergences (K2P distance 6.4–8.1% in complete cyt b sequence) among most of the morphotypes. Therefore, we propose a split of the current T. persicus rank into three species: T. afer in Africa, and T. persicus and T. parvus sp. nov. in the Middle east. The results of the molecular analysis also indicated relatively close proximity of the Malagasy T. menamena to Arabian T. persicus, suggesting a northern route of colonisation of Madagascar from populations from the Middle east or north-eastern Africa as a plausible alternative to presumed colonisation from east Africa. Due to a considerable genetic distance (21.6–26.2% in 731 bp sequence of cyt b) and substantial morphological differences from the continental forms of Triaenops as well as from Malagasy T. menamena, we propose generic status (Paratriaenops gen. nov.) for the group of Malagasy species, T. furculus, T. auritus, and T. pauliani. We separated the genera Triaenops and Paratriaenops gen. nov. from other hipposiderid bats into Triaenopini trib. nov. recognising their isolated position within the family Hipposideridae Lydekker, 1891.
Tanichthys albiventris, new species, from the River Jiangping in Dongxing City, Guangxi Province is distinguished from Tanichthys albonubes by the presence of a reddish-orange dorsal-fin margin (vs. white) and 9-10 (9 in mode) branched anal-fin rays (vs. 8 in mode). Tanichthys flavianalis, new species, from the River Jiuqu in Qionghai City, Hainan Province is distinguished from T. albiventris and T. albonubes by the presence of a golden anal-fin margin (vs. white) and 7 (rarely 6) branched dorsal-fin rays (vs. 6 in mode). In T. albiventris, T. albonubes, and T. flavianalis the black lateral stripe is located on the dorsal half of the flank, distinguishing them from Tanichthys kuehnei and Tanichthys micagemmae, in which it is mid-lateral. Tanichthys thabacensis is different from all other species of Tanichthys in the shape of the mouth and insertion of the anal fin; it is tentatively referred to as Aphyocypris.