We studied the agamic complex of Hieracium subgen. Pilosella in the Šumava/Böhmerwald, the borderland between the Czech Republic and Germany. Their DNA ploidy levels/chromosome numbers, breeding systems, chloroplast haplotypes as well as the clonal structure of apomicts were determined. The complex consists of the following basic and intermediate species and recent hybrids. Basic species: H. aurantiacum L. (tetraploid and pentaploid, both apomictic), H. caespitosum Dumort. (tetraploid, apomictic), H. lactucella Wallr. (diploid, sexual), H. pilosella L. (tetraploid, sexual); intermediate species: H. floribundum Wimm. et Grab. (tetraploid, apomictic), H. glomeratum Froel. (tetraploid and pentaploid, both apomictic), H. scandinavicum Dahlst. (tetraploid, apomictic); recent hybrids: H. floribundum × H. pilosella (partly corresponding to H. piloselliflorum – tetraploid and hexaploid; tetraploid sexual or apomictic), H. glomeratum × H.pilosella (aneuploid, 2n = 38), H. aurantiacum × H. floribundum (tetraploid, almost sterile or apomictic), H. lactucella × H. pilosella (H. schultesii, triploid sterile, tetraploid sexual), H. aurantiacum × H. pilosella (H. stoloniflorum, tetraploid, sexual), H. aurantiacum > H. pilosella (H. rubrum, hexaploid). The hexaploid hybrids between H. pilosella and H. floribundum or H. aurantiacum produced mainly polyhaploid progeny. Two trihaploid plants were found growing in the neighbourhood of their putative hexaploid maternal parent H. rubrum, which is the first record of polyhaploids of this subgenus in the field. Comparison with other mountain ranges (especially the Krušné hory/Erzgebirge, and Krkonoše) with an almost identical composition of basic species, revealed that the structure of the agamic complexes differ.