Because of the shortage of phycoerythrin (PE) gene sequences from rhodophytes, peBA encoding β- and α -subunits of PE from three species of red algae (Ceramium boydenn, Halymenia sinensis, and Plocamium telfariae) were cloned and sequenced. Different selection forces have affected the evolution of PE lineages. 8.9 % of the codons were subject to positive selection within the PE lineages (excluding high-irradiance adapted Prochlorococcus). More than 40 % of the sites may be under positive selection, and nearly 20 % sites are weakly constraint sites in high-irradiance adapted Prochlorococcus. Sites most likely undergoing positive selection were found in the chromophore binding domains, suggesting that these sites have played important roles in environmental adaptation during PE diversification. Moreover, the heterogeneous distribution of positively selected sites along the PE gene was revealed from the comparison of low-irradiance adapted Prochlorococcus and marine Synechococcus, which firmly suggests that evolutionary patterns of PEs in these two lineages are significantly different. and S. Qin, F. Q. Zhao, C. K. Tseng.
Acid rain is a serious environmental problem and has obvious impacts on the growth, reproduction, and photosynthesis of terrestrial plants. Ulva prolifera, a main blooming species of green tides, was studied on its physiological response to acid rain. The photosynthetic parameters were determined under different conditions (salinity: 1, 10, 30‰; pH: 3.0, 3.5, 4.5; duration: 0.5, 1.0, 2.0 h) followed by 24-h recovering under natural conditions. Results showed 1-h treatment with pH 3.5 caused 50-70% reduction in the maximal quantum yield of PSII photochemistry (Fv/Fm) and effective quantum yield of PSII photochemistry (ФPSII) at normal salinity but when the low pH was combined with a salinity of 10‰ or lower, PSII activity was almost completely inhibited. Moreover, the low salinity (1‰ and 10‰) reduced the degree of photoprotection under low pH (3.5) conditions. Finally, we speculated if the pH of acid rain ≤ 3.5, with 1‰ salinity and 2-h rainfall time, the amount of U. prolifera and the scale of green tides would decrease.
Synechococcus is one of the most abundant photoautotrophic picoplankton in the marine ecosystem. However, it is not clear how Synechococcus assemblages respond to light intensity variation in a genus group. Here, enriched Synechococcus assemblages from in situ coastal seawater were subjected to light intensity simulation experiments in a range of 9-243 μmol(photon) m-2 s-1. Characteristics concerning physiology, genomics, and metatranscriptomics were analyzed. Physiologically, the fitting model predicted photosynthesis indications and pigment contents increased with different trends following the light intensity. Genomic sequencing demonstrated that both the phylogenetic and phenotypic compositions of Synechococcus assemblage exhibited population succession. Especially, the proportion of Synechococcus pigment type 2 was changed significantly. In metatranscriptomics, most genes were downregulated in the high-light intensity group, while photosynthesis-related genes were entirely upregulated. The high upregulation of photosynthesis-related genes, such as psbO, psbA, apcB, and cpcB, corresponded to the succession of Synechococcus genotype and was responsible for the physiological shift in response to light intensity.