Capillary barriers are an interesting alternative component for cover systems of landfills and contaminated sites. Provided they are sufficiently validated, soil hydrological models could be fast and powerful tools for the dimensioning of capillary barriers. Outflow rates measured in a 10 m long tipping trough for one material combination and two slopes from stationary periods were compared to simulation results of HYDRUS (2D/3D), Version 2.05. The measured outflow rates show a typical pattern with slope-dependent threshold values indicating the efficiency of the capillary barrier. This flow pattern could not be reproduced with HYDRUS (2D/3D) that for different input setups produced smooth patterns without thresholds. The input setup was varied for different soil hydraulic models (van Genuchten-Mualem vs. Brooks-Corey), homogeneous and heterogeneous transport domains (no scaling vs. stochastically distributed scaling factors considering the Miller-Miller similitude), different HYDRUS versions (standard vs. alternative; i.e., with material properties assigned either to finite element nodes or finite elements, respectively), and different lower boundary conditions (seepage face vs. free drainage). Differences between measured and simulated outflow patterns could be caused by the measurements, the application of the model, or by the model itself. The van Genuchten-Mualem model may not be suitable to describe the soil hydrological relationships of these particular materials. The reason for the mismatch, however, could not be identified yet.